Index of /termdb/2011-03-02

Icon  Name                           Last modified      Size  Description
[DIR] Parent Directory - [TXT] README 10-May-2011 14:51 2.4K [   ] go_daily-termdb-data.gz 02-Mar-2011 07:35 7.2M [   ] go_daily-termdb-summary.txt.gz 02-Mar-2011 07:35 384 [   ] go_daily-termdb-tables.tar.gz 02-Mar-2011 07:35 7.1M [   ] go_daily-termdb.obo-xml.gz 02-Mar-2011 07:35 2.8M [   ] go_daily-termdb.owl.gz 02-Mar-2011 07:35 3.6M [   ] go_daily-termdb.rdf-xml.gz 02-Mar-2011 07:35 3.1M [   ] go_daily.autoQC 02-Mar-2011 07:35 9.0K
GO DATABASE DAILY TERMDB DOWNLOAD
=================================

For full documentation see

  http://www.geneontology.org/GO.database.shtml

This download area is for the automated daily build of the GO
Database, containing NO associations to gene products

This build is NOT manually checked; the build is automated, and there
is always a small possibility that problems could arise during the
build process. We try and anticipate these problems and build in
automated checks; however, it is not always possible to anticipate all
possible problems.

For a release that is manually QC'd, see the monthly download area

This release is a "termdb" build only - for a build that contains
associations to gene products, please see the monthly download area.

FILES
=====

*FILE: go_daily-termdb-tables.tar.gz

This is the mysql dump for the GO database - to import into a local db:

  tar -zxvf go_daily-termdb-tables.gz
  cd go_daily-termdb-tables
  echo "create database mygo" | mysql
  cat *.sql | mysql mygo
  mysqlimport -L mygo *.txt

*FILE: go_daily-termdb-data.gz

This is a mysql dump as SQL statements - this may be more portable for
importing into non-mysql databases

*FILE: go_daily-schema-mysql.sql.gz    ### No longer provided as of 2011-01-27

This is the SQL DDL for the full GO Database
(note that many of these tables will not be populated, because this is a "termdb")

For complete, up to date schema documentation please refer to
  http://www.geneontology.org/GO.database.shtml

*FILE: go_daily-termdb.rdf.gz

This is the RDF-XML dump of the termdb

*FILE: go_daily-termdb.obo-xml.gz

Obo-XML Export (this XML format is still in beta and subject to change)

See http://www.geneontology.org/GO.tools.software-libraries.shtml

*FILE: go_daily-termdb.owl.gz

OWL Export (the Obo-OWL mapping is still in beta and subject to change)

See http://www.geneontology.org/GO.tools.software-libraries.shtml

*FILE: go_daily.dtd.gz

The DTD for the above

*FILE: go_daily-utilities-src.tar.gz

The go-perl and go-db-perl tools for accessing the GO database

See http://www.geneontology.org/GO.database.shtml for details

*FILE: go_daily.autoQC

A summary of the contents of some of the above files

*************************************
QUESTIONS:

Email the go-database mail list; go to

  http://www.geneontology.org/GO.database.shtml

And click on "Mail List" in the sidebar

Be sure to have read the rest of the database documentation before
asking a question