Index of /termdb/2008-07-26

Icon  Name                           Last modified      Size  Description
[DIR] Parent Directory                                    -   
[   ] go_daily-obo-xml.dtd.gz        26-Jul-2008 05:05  1.1K  GZIP compressed docume>
[   ] go_daily-rdf.dtd.gz            26-Jul-2008 05:05  1.6K  GZIP compressed docume>
[   ] go_daily-schema-mysql.sql.gz   26-Jul-2008 05:05   14K  GZIP compressed docume>
[   ] go_daily-termdb-data.gz        26-Jul-2008 05:05  6.1M  GZIP compressed docume>
[   ] go_daily-termdb-summary.txt.gz 26-Jul-2008 05:05  379   GZIP compressed docume>
[   ] go_daily-termdb-tables.tar.gz  26-Jul-2008 05:05  6.0M  GZIP compressed docume>
[   ] go_daily-termdb.obo-xml.gz     26-Jul-2008 05:05  2.1M  GZIP compressed docume>
[   ] go_daily-termdb.owl.gz         26-Jul-2008 05:05  2.7M  GZIP compressed docume>
[   ] go_daily-termdb.rdf-xml.gz     26-Jul-2008 05:05  2.4M  GZIP compressed docume>
[   ] go_daily-utilities-src.tar.gz  26-Jul-2008 05:05   28M  GZIP compressed docume>
[   ] go_daily.autoQC                26-Jul-2008 05:05  7.3K  

GO DATABASE DAILY TERMDB DOWNLOAD
=================================

For full documentation see

  http://www.geneontology.org/GO.database.shtml

This download area is for the automated daily build of the GO
Database, containing NO associations to gene products

This build is NOT manually checked; the build is automated, and there
is always a small possibility that problems could arise during the
build process. We try and anticipate these problems and build in
automated checks; however, it is not always possible to anticipate all
possible problems.

For a release that is manually QC'd, see the monthly download area

This release is a "termdb" build only - for a build that contains
associations to gene products, please see the monthly download area.

FILES
=====

*FILE: go_daily-termdb-tables.tar.gz

This is the mysql dump for the GO database - to import into a local db:

  tar -zxvf go_daily-termdb-tables.gz
  cd go_daily-termdb-tables
  echo "create database mygo" | mysql
  cat *.sql | mysql mygo
  mysqlimport -L mygo *.txt

*FILE: go_daily-termdb-data.gz

This is a mysql dump as SQL statements - this may be more portable for
importing into non-mysql databases

*FILE: go_daily-schema-mysql.sql.gz

This is the SQL DDL for the full GO Database
(note that many of these tables will not be populated, because this is a "termdb")

For complete, up to date schema documentation please refer to
  http://www.geneontology.org/GO.database.shtml

*FILE: go_daily-termdb.rdf.gz

This is the RDF-XML dump of the termdb

*FILE: go_daily-termdb.obo-xml.gz

Obo-XML Export (this XML format is still in beta and subject to change)

See http://www.geneontology.org/GO.tools.software-libraries.shtml

*FILE: go_daily-termdb.owl.gz

OWL Export (the Obo-OWL mapping is still in beta and subject to change)

See http://www.geneontology.org/GO.tools.software-libraries.shtml

*FILE: go_daily.dtd.gz

The DTD for the above

*FILE: go_daily-utilities-src.tar.gz

The go-perl and go-db-perl tools for accessing the GO database

See http://www.geneontology.org/GO.database.shtml for details

*FILE: go_daily.autoQC

A summary of the contents of some of the above files

*************************************
QUESTIONS:

Email the go-database mail list; go to

  http://www.geneontology.org/GO.database.shtml

And click on "Mail List" in the sidebar

Be sure to have read the rest of the database documentation before
asking a question