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DATESTAMP 18-Jul-2008 05:05 11
latest/ 18-Jul-2008 05:05 -
GO DATABASE DAILY TERMDB DOWNLOAD
=================================
For full documentation see
http://www.geneontology.org/GO.database.shtml
This download area is for the automated daily build of the GO
Database, containing NO associations to gene products
This build is NOT manually checked; the build is automated, and there
is always a small possibility that problems could arise during the
build process. We try and anticipate these problems and build in
automated checks; however, it is not always possible to anticipate all
possible problems.
For a release that is manually QC'd, see the monthly download area
This release is a "termdb" build only - for a build that contains
associations to gene products, please see the monthly download area.
FILES
=====
*FILE: go_daily-termdb-tables.tar.gz
This is the mysql dump for the GO database - to import into a local db:
tar -zxvf go_daily-termdb-tables.gz
cd go_daily-termdb-tables
echo "create database mygo" | mysql
cat *.sql | mysql mygo
mysqlimport -L mygo *.txt
*FILE: go_daily-termdb-data.gz
This is a mysql dump as SQL statements - this may be more portable for
importing into non-mysql databases
*FILE: go_daily-schema-mysql.sql.gz
This is the SQL DDL for the full GO Database
(note that many of these tables will not be populated, because this is a "termdb")
For complete, up to date schema documentation please refer to
http://www.geneontology.org/GO.database.shtml
*FILE: go_daily-termdb.rdf.gz
This is the RDF-XML dump of the termdb
*FILE: go_daily-termdb.obo-xml.gz
Obo-XML Export (this XML format is still in beta and subject to change)
See http://www.geneontology.org/GO.tools.software-libraries.shtml
*FILE: go_daily-termdb.owl.gz
OWL Export (the Obo-OWL mapping is still in beta and subject to change)
See http://www.geneontology.org/GO.tools.software-libraries.shtml
*FILE: go_daily.dtd.gz
The DTD for the above
*FILE: go_daily-utilities-src.tar.gz
The go-perl and go-db-perl tools for accessing the GO database
See http://www.geneontology.org/GO.database.shtml for details
*FILE: go_daily.autoQC
A summary of the contents of some of the above files
*************************************
QUESTIONS:
Email the go-database mail list; go to
http://www.geneontology.org/GO.database.shtml
And click on "Mail List" in the sidebar
Be sure to have read the rest of the database documentation before
asking a question